ConfigurationConfigure NMdata behaviour |
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Configure default behavior of NMdata functions |
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Data PreparationFunctions for preparation of PK/PD data sets |
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Standardize column order in Nonmem input data |
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Compare elements in lists with aim of combining |
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List rows with missing values across multiple columns |
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Extract unique non-missing value from vector |
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Merge, order, and check resulting rows and columns. |
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Rename columns matching properties of data contents |
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Assign exclusion flags to a dataset based on specified table |
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Create an overview of number of retained and discarded datapoints. |
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Add time since previous dose to data, time of previous dose, most recent dose amount, cumulative number of doses, and cumulative dose amount. |
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Transform repeated dosing events (ADDL/II) to individual dosing events |
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Replace strings in character character columns of a data set |
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Write dataWrite data and edit update NONMEM control streams |
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Write dataset for use in Nonmem (and R) |
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Generate text for INPUT and possibly DATA sections of NONMEM control streams. |
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stamp a dataset or any other object |
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Replace ($)sections of a Nonmem control stream |
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Replace data file used in Nonmem control stream |
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Extract column labels as defined in SAS |
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Retrieve NONMEM dataFunctions for retrieving NONMEM input and output data |
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Automatically find Nonmem input and output tables and organize data |
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Run NMscanData on multiple models and stack results |
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Find and read all output data tables in Nonmem run |
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Find and read input data and optionally translate column names according to the $INPUT section |
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Read in data file |
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Read input data formatted for Nonmem |
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Read information from Nonmem ext files |
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Read information from Nonmem phi files |
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Read Shrinkage data reported by Nonmem |
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Read an output table file from Nonmem |
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Read comments to parameter definitions in Nonmem control streams |
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Relate parameter names and variables based on control stream code sections. |
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Get metadata from an NMdata object |
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add Omega correlations to a parameter table |
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Checking and DebuggingFunctions for checking data and input control streams |
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Compare $INPUT in control stream to column names in input data |
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Check data for Nonmem compatibility or check control stream for data compatibility |
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ProgrammingAdditional functions for programming |
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Create character vectors without quotation marks |
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Define a vector with factor levels in the same order as occurring in the vector. |
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Convert a data.table of parameter estimates to a matrix |
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upper or lower triangle or all values of a matrix as long-format |
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Expand grid of data.tables |
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Get dimensions of multiple objects |
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Extract columns that vary within values of other columns |
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Extract columns that vary within values of other columns in a data.frame |
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paste something before file name extension. |
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Change file name extension |
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Check if an object is 'NMdata' |
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Remove NMdata class and discard NMdata meta data |
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Test if a variable can be interpreted by Nonmem |
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Extract sections of Nonmem control streams |
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Extract the data file used in a control stream |
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Versatile text extractor from Nonmem (input or output) control streams |
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Basic arithmetic on NMdata objects |
generate a name for a new data column that is not already in use. |
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MiscMiscellaneous |
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summary method for NMdata objects |
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print method for NMdata summaries |