Translate Nonmem filters to R code and apply to data

Translate Nonmem filters to R code and apply to data

NMapplyFilters(data, file, lines, filters, invert = FALSE, as.fun, quiet)

Arguments

data

An input data object. Could be read with NMreadCsv or NMscanInput.

file

Path to mod/lst file. Only one of file or lines to be given. See `?NMreadSection` for understanding when to use, file, or lines. Only used when `filters` not provided.

lines

The mod/lst as character, line by line.

filters

A `data.frame` with filters as returned by `NMreadFilters()`. If not supplied, filters will be read from `file`/`lines`.

invert

Invert the filters? This means read what Nonmem would disregard, and disregard what Nonmem would read.

as.fun

The default is to return data as a data.frame. Pass a function (say tibble::as_tibble) in as.fun to convert to something else. If data.tables are wanted, use as.fun="data.table". The default can be configured using NMdataConf.

quiet

Don't report information along the way if no warnings or errors. Default is FALSE.

Value

data with filters applied

Details

This is not bulletproof. Nested conditions are not supported altogether.

See also

NMreadFilters

Other Nonmem: NMextractText(), NMgenText(), NMreadSection(), NMreplaceDataFile(), NMwriteSection()