Package index
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NMaddSamples() - Add simulation (sample) records to dosing records
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NMcreateDoses() - Easily and flexibly generate dosing records
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NMexec() - Execute Nonmem and archive input data with model files
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NMreadFilters() - Read data filters from a NONMEM model
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NMreadInits() - Tabulate information from parameter sections in control streams
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NMreadSim() - Read simulation results based on NMsim's track of model runs
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NMsim() - Simulate from a Nonmem model
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unNMsimModTab()is.NMsimModTab()merge(<NMsimModTab>)t(<NMsimModTab>)dimnames(<NMsimModTab>)rbind(<NMsimModTab>)cbind(<NMsimModTab>) - Remove NMsimModTab class and discard NMsimModTab meta data
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unNMsimRes()is.NMsimRes()merge(<NMsimRes>)t(<NMsimRes>)dimnames(<NMsimRes>)rbind(<NMsimRes>)cbind(<NMsimRes>) - Remove NMsimRes class and discard NMsimRes meta data
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NMsimTestConf() - Summarize and test NMsim configuration
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NMsim_EBE() - Use emperical Bayes estimates to simulate re-using ETAs
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NMsim_NWPRI() - Simulate with parameter variability using the NONMEM NWPRI subroutine
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NMsim_VarCov() - Simulate with parameter values sampled from a covariance step
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NMsim_asis() - Simulation method that uses the provided control stream as is
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NMsim_default() - Transform an estimated Nonmem model into a simulation control stream
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NMsim_typical() - Typical subject simiulation method
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NMwriteInits() - Writes a parameter values to a control stream
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NMwriteSizes() - Create or update $SIZES in a control stream
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add() - Create function that adds text elements to vector
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addEVID2() - Add simulation records to dosing records
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addResVar() - Add residual variability based on parameter estimates
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deleteTmpDirs() - clean up temporary directories left by PSN and NMsim.
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expandCovs() - Create data set where each covariate is univariately varied (see `forestDefineCovs()`)
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forestDefineCovs() - Create data set where each covariate is univariately varied
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forestSummarize() - Summarize simulated exposures relative to reference subject
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genPhiFile() - Generate a .phi file for further simulation with Nonmem
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inputArchiveDefault() - Default location of input archive file
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modTab() - Get NMsim model metadata
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overwrite() - Create function that modifies text elements in a vector Namely used to feed functions to modify control streams using `NMsim()` arguments such as `modify`. Those functions are often onveniently passed a function. `add` and `overwrite` are simple shortcuts to creating such functions. Make sure to see examples.
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print(<summary_NMsimRes>) - print method for NMsimRes summaries
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readParsWide() - Parameter data from csv
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sampleCovs() - Sample subject-level covariates from an existing data set
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samplePars() - Sample model parameters using `mvrnorm` or the `simpar` package
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sampleParsSimpar() - Sample model parameters using the `simpar` package
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simPopEtas() - Generate a population based on a Nonmem model
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summarizeCovs() - Summarize simulated exposures relative to reference subject (see `forestSummarize()`)
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summary(<NMsimRes>) - summary method for NMsim results (NMsimRes objects)
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triagSize() - Calculate number of elements for matrix specification