Plot correlation matrix heatmap from completed NONMEM run This function differs from `plotEstCorr` in that it will plot a full matrix with diagonals representing standard error (rather than half matrix with no diagonals). Requires successful covariance step in NONMEM.

Plot correlation matrix heatmap from completed NONMEM run This function differs from `plotEstCorr` in that it will plot a full matrix with diagonals representing standard error (rather than half matrix with no diagonals). Requires successful covariance step in NONMEM.

Usage

plotCorrelationHeatmap(
  file.lst,
  pars = NULL,
  merge.pars.ext.by = "parameter",
  col.label = NULL,
  tableno = "max",
  ...
)

Arguments

file.lst

NONMEM model output file, must be completed run

pars

a parameter table to map NONMEM parameters to their labels

merge.pars.ext.by

a common column in the parameter table and .ext file which will be used for merging the parameter table and the parameter labels in the .ext file, as read by `NMdata::NMreadExt()`. usually this column is 'parameter' and has values such as 'THETA1', 'THETA2', .... , 'OMEGA(1,1)', 'OMEGA(2,2)', ... 'SIGMA(1,1)', etc.

col.label

the column in the parameter table which we will use for labeling the plot panels.

...

Passed to `NMdata::NMreadExt()`.